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Structural genomics (methodology)
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| 1 | PA-1 | Large-scale structure prediction of metalloproteins and the problem of structure validation |
| Antonio Rosato |
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| 2 | PA-2 | Automated protein domain prediction system for the selection of structure determination targets |
| E. Chikayama |
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| 3 | PA-3 | Application of the cell-free protein synthesis to the structure determination of basic protein folds using the NMR spectroscopy |
| Takanori Kigawa |
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| 4 | PA-4 | Effect of long-range order restraints in the solution structure analysis of Abp1/DNA complex |
| J. Kikuchi |
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| 5 | PA-5 | Probabilistic Comparison of Protein Structures |
| Ryotaro Koike |
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| 6 | PA-6 | Automated search of natively folded protein fragments for high-throughput structure determination in structural genomics |
| Yutaka Kuroda |
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| 7 | PA-7 | Effective Use of Neutralizing Monoclonal Antibody for the Crystallization and Structural Determination of the Functional Domain of Human Thrombopoietin (hTPO) |
| Ryota Kuroki |
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| 8 | PA-8 | Characterization and Prediction of Domain Linker Sequences by Neural Network |
| Satoshi Miyazaki |
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| 9 | PA-9 | Systematic Preparation of Thermus thermophilus HB8 Proteins for Structural)B@and Functional Genomics |
| Hiroyuki Motoshima |
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| 10 | PA-10 | High Throughput Crystallization Facility and construction of three X-ray diffraction beamlines at BESSY-Synchrotron within the Berlin Protein Structure Factory (PSF) |
| Uwe Mueller |
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| 11 | PA-11 | Identification of folded protein domains candidate to high-throughput structure determination: A pilot experiment using the Thermus thermophilus genome |
| Ako Okumura |
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| 12 | PA-12 | Carcass binding mode: a novel approach for routine crystallization and structure determination of DNA binding proteins |
| Tahir H. Tahirov |
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| 13 | PA-13 | Production of Thermus thermophilus HB8 proteins by cell-free system |
| Kaori Tajima |
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| 14 | PA-14 | Efficient protein structure determination by NMR based on residual dipolar couplings and local structure search in the protein structure database |
| Shin-ichi Tate |
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| 15 | PA-15 | Structural Studies on New Functional Proteins and Proteins Involved in Transcription and Translation of Thermus thermophilus HB8 |
| Takaho Terada |
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| 16 | PA-16 | A Method for High Throughput Screening of Nucleic Acids with Extremely High Rate of Hybridization |
| Makoto Tsuruoka |
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| 17 | PA-17 | From Nucleotide Sequence to Tertiary Protein Structure. Methods and Approaches |
| Vladimir Tumanyan |
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| 18 | PA-18 | High-Throughput and Highly Productive Expression of Proteins using Cell-Free Protein Synthesis for Structural and Functional Analysis |
| Takashi Yabuki |
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| 19 | PA-19 | GeneAtlasTM - An Automatic High-throughput Pipeline for Structure Prediction and Function Assignment for Genomic Sequences |
| Lisa Yan |
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Informatics
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| 29 | PC-1 | On the Potential Power of Quantum Computation Applied to Structural Genomics |
| Toshio Fukumi |
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| 30 | PC-2 | "Energy Landscape of a Peptide in Explicit Water Consisting of Random-coil, a-helix, 3_10-helix, and b-hairpin Conformations" |
| Junichi Higo |
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| 31 | PC-3 | GTOP : Database for predicted protein structures from genome sequences |
| Takeshi Kawabata |
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| 32 | PC-4 | Comparison of geometries and properties of protein molecular surface for structure-based function prediction |
| Kengo Kinoshita |
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| 33 | PC-5 | Software for Identification and Annotation of Conserved Domains |
| Stephen Bryant |
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| 34 | PC-6 | An Energy Potential and Alignment Method for Identifying Protein Sequence - Structure Compatibilities |
| Sanzo Miyazawa |
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| 35 | PC-7 | Mutational directions of two mycoplasma species in the nucleotide? composition space |
| Hiroshi Nakashima |
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| 36 | PC-8 | Accurate free energy landscapes of peptides by multicanonical molecular dynamics simulations and quantum mechanical calculations |
| Satoshi Ono |
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| 37 | PC-9 | Characterization of protein surface via correlation in surface electrostatic potential |
| Keishi Sadanami |
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| 38 | PC-10 | Structure-Specificity Relationship and Target Prediction of Transcription Factors |
| A. Sarai |
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| 39 | PC-11 | Comparative Genome-Wide Analysis by Membrane Protein Prediction System SOSUI |
| Masashi Sonoyama |
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| 40 | PC-12 | A Novel Measure for Recognition and Classification of Transmembrane Protein Structures |
| Makiko Suwa |
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| 41 | PC-13 | Identification of protein domain linkers using secondary structure prediction and homologous sequence alignment |
| Takanori Tanaka |
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| 42 | PC-14 | Development of a system for selection and prioritization of targets for structure determination in structural genomics |
| Kazutoshi Tani |
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| 43 | PC-15 | A Secondary Structure Prediction System with Visualization Function of Fragment Homology |
| Shouji Tatsumoto |
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| 44 | PC-16 | DbClustal: rapid and reliable global multiple alignments of protein sequences detected by database searches |
| Jean-Claude Thierry |
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| 45 | PC-17 | A Triangle Lattice Model that Predicts Transmembrane Helix Configuration using a Polar Jigsaw Puzzle |
| Junichi Uechi |
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| 46 | PC-18 | BMRB: The Biomolecular Magnetic Resonance Data Bank. |
| ELDON ULRICH |
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| 47 | PC-19 | Completeness in Structural Genomics |
| Dennis VITKUP |
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| 48 | PC-20 | Analysis and structure assignment of novel protein sequences in the HUNT database |
| Henrik T. Yudate |
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| 49 | PC-21 | Prediction of secondary structure of RNA by NMR quantum computer |
| Toshio Fukumi |
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Structural Biology
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| 54 | PF-1 | Presequence Recognition by the Mitochondrial Protein Import Receptor Tom20 |
| Daisuke Kohda |
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| 55 | PF-2 | NMR Structure and Dynamics of the N-terminal J Domain of Murine Polyomavirus T Antigens: Implications for DnaJ-Like Domains and for Mutations of T Antigens |
| Steven R. Van Doren |
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| 56 | PF-3 | BeF3- acts as a general phosphate analog in proteins phosphorylated at aspartate residue |
| Ho Cho |
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| 57 | PF-4 | Domain analysis of the human Mcm6 protein |
| Keiko Eda |
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| 58 | PF-5 | A Pilot Study of the X-ray analysis for Structural Genomics on Thermus thermophilus HB8 |
| Kensaku Hamada |
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| 59 | PF-6 | Solution structure of the Myb-motif from human Rap1 |
| Shingo Hanaoka |
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| 60 | PF-7 | Crystal structure of the Sex-lethal protein in complex with the transformer mRNA precursor at 1.7 ANG. resolution |
| Noriko Handa |
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| 61 | PF-8 | Determination of the relative module orientation of the Fibronectin 6F11F2 module pair:15N relaxation times and residual dipolar couplings |
| Yoshihiro Hashimoto |
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| 62 | PF-9 | Crystal structure of the BAH domain of ORC1 |
| Mariko Hayashi |
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| 63 | PF-10 | "Myristoylation dependent novel interacton between calmodulin and CAP-22/NAP-22, a neuron specific protein kinase C substrate protein" |
| Nobuhiro Hayashi |
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| 64 | PF-11 | Solution Structure of PX Domain from p47phox of Human NADPH Oxidase |
| Hidekazu Hiroaki |
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| 65 | PF-12 | "Comparison of the crystal structures of antigen-binding fragments from the murine and humanized anti-Fas antibody, HFE7A." |
| Shuichiro Ito |
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| 66 | PF-13 | The interaction of DNA-binding domains from c-Myb and HSF-3 |
| Noriyuki Iwasaki |
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| 67 | PF-14 | Structural Study on the C-terminal SH3 Domain of p67phox in Complex with the C-terminal Peptide of p47phox: A New Mode of the SH3-peptide Interaction |
| Keiichiro Kami |
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| 68 | PF-15 | Interaction in solution between IgG and a soluble Fc receptor |
| Koichi Kato |
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| 69 | PF-16 | Solution Structure of the Epsin N-terminal homology (ENTH) domain of human Epsin |
| Seizo Koshiba |
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| 70 | PF-17 | Crystallization and preliminary X-ray diffraction analysis of the extracellular domain of the cell surface antigen CD38 complexed with ganglioside |
| Mutsuko Kukimoto |
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| 71 | PF-18 | Structure of the YSPTSPS repeat within the CTD of RNA polymerase II in water : NMR studies of cyclic peptides containing the repeat units |
| Yasuhiro Kumaki |
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| 72 | PF-19 | Crystal Structure of a Soluble Region of Metabotropic Glutamate Receptor Subtype 1 |
| Naoki Kunishima |
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| 73 | PF-20 | Crystal structure of the electron transfer complex between ferredoxin and ferredoxin-NADP+ reductase from maize leaf |
| Genji Kurisu |
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| 74 | PF-21 | Crystal structure of Methanococcus jannaschiilactate/malate dehydrogenase |
| Byung Il Lee |
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| 75 | PF-22 | "Crystal structure of Escherichia coli CyaY protein, a member of the evolutionarily conserved frataxin family" |
| Jae Young Lee |
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| 76 | PF-23 | Molecular recognition of human killer cell immunoglobulin(Ig) -like receptors (KIRs) |
| Katsumi Maenaka |
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| 77 | PF-24 | "Structural and Functional Analyses of DNA Repair Enzymes of An Extreme Thermophile, Thermus thermophilus HB8" |
| Ryoji Masui |
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| 78 | PF-25 | Intermolecular 31P-15N and 31P-1H scalar couplings across hydrogen bonds formed between a protein and a nucleotide |
| Masaki Mishima |
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| 79 | PF-26 | Changes in dynamics of hnRNP D0 between free and complex with DNA |
| Youhei Miyanoiri |
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| 80 | PF-27 | "Molecular mechanism on the regulation of)B@metallothionein-like gene expression with SmtB, sensoring heavy-metal ion concentration in the cyanobacterial cell" |
| Eugene Hayato Morita |
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| 81 | PF-28 | "Mutants of the telomeric protein, hTRF1" |
| Atsushi Murase |
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| 82 | PF-29 | Solution structure of the transactivation domain from ATF-2 |
| Aritaka Nagadoi |
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| 83 | PF-30 | Protein-protein interaction of the transactivation domain from ATF-2 |
| Aritaka Nagadoi |
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| 84 | PF-31 | "Crystal Structure of Nucleotide Excision Repair Enzyme, UvrB from Thermus thermophilus HB8" |
| Noriko Nakagawa |
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| 85 | PF-32 | "Solution structure of the DNA-bound form of the telomeric protein, hTRF1" |
| Tadateru Nishikawa |
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| 86 | PF-33 | Determination of the Relative Orientation between Two Different Molecular Arrignment Tensor |
| Kaoru Nomura |
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| 87 | PF-34 | Structural studies of the DNA-complex of PhoB |
| Hideyasu Okamura |
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| 88 | PF-35 | Structural Studies of the General Transcription Factor TFIIE |
| Masahiko Okuda |
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| 89 | PF-36 | Phosphatidylinositol 3-Phosphate Recognition by the FYVE Domain |
| M. Overduin |
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| 90 | PF-37 | Analysis of RNA global structures using residual dipolar couplings |
| Taiichi Sakamoto |
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| 91 | PF-38 | Identification of Clones expressing proteins with a specific activity on high density protein filters |
| Harald Seitz |
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| 92 | PF-39 | NMR studies of the Six domain |
| Hideaki Shimojo |
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| 93 | PF-40 | EmPLiCS: an empirical approach for structure based prediction of peptide ligand of protein |
| Tsuyoshi Shirai |
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| 94 | PF-41 | Structure of the Native and Denatured States of Co-chaperonin GroES as Studied by Analysis of Solution X-ray Scattering Profiles |
| Kunitsugu Soda |
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| 95 | PF-42 | Structural studies on the DNA-bound forms of two artificial dimers from the purine repressor |
| Sakura Suzuki |
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| 96 | PF-43 | The Crystal Structure of the DNA-Binding Domain of the Human Centromere Protein B in Complex with CENP-B Box DNA |
| Yoshinori Tanaka |
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| 97 | PF-44 | Crystal Structure of Glycerol-3-Phosphate Acyltransferase from squash (Cucurbita moscata) |
| Taro Tamada |
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| 98 | PF-45 | Solution structure of the human parvulin-like peptidyl prolyl cis/trans isomerase, hPar14 |
| Mikako Shirouzu |
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| 99 | PF-46 | Crystal Structure of the Ia of Clostridium perfringens Iota Toxin |
| Hideaki Tsuge |
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| 100 | PF-47 | NMR Structure and Backbone Dynamics of Human Tissue Inhibitor of Metalloproteinases-1 |
| Bin Wu |
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| 101 | PF-48 | The granularity of structure/function relationships in carbohydrate binding modules |
| Mike P. Williamson |
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| 102 | PF-49 | The conformational change mechanism of F1-ATPase be-ta subunit |
| Hiromasa Yagi |
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| 103 | PF-50 | Crystal structure of the Holliday junction migration motor protein RuvB from Thermus thermophillus HB8 |
| Kazuhiro Yamada |
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| 104 | PF-51 | The searching for members of the DNA glycosylase superfamily in genome sequences by using the 3D-profile method considering protein stabilization factors |
| Yuriko Yamagata |
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| 105 | PF-52 | "Lengthwise Motion of Anti-Rhinovirus Drug, WIN52084s, and Radial Oscillation and Shrink of Rhinovirus Capsid Studied in Rotational Symmetry Boundary Conditions" |
| Shigetaka Yoneda |
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| 106 | PF-53 | Structural study on homologous recombination in prokaryote |
| Mariko Ariyoshi |
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| 107 | PF-54 | Sensory Mechanism of Oxygen Sensor FixL from Rhizobium meliloti : Crystallographic, Mutagenesis and Resonance Raman Spectroscopic Studies |
| Hideyuki Miyatake |
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